<?xml version="1.0" encoding="UTF-8"?>
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
<url><loc>https://filehashintel.com/name/abi/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/_compat/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/_compat/errors.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/_compat/filesystem.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/_compat/logger.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/_compat/progress.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/_compat/skills/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/_compat/skills/base.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/_compat/skills/registry.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/_shared.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/agent/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/agent/context.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/agent/envelopes.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/agent/interface.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/agent_integrations.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/cli.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/config.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/dashboard.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/filesystem.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/json_utils.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/logger.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/normalize/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/normalize/abundance.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/normalize/annotation.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/normalize/plasmid_prediction.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/parsers.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/pipeline.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/planner.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/progress.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/report/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/report/html.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/report/markdown.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/resources.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/result_validation.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/sample_sheet.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/schemas.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/selectors.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/abundance.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/annotation.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/assembly.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/base.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/host_prediction.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/plasmid_binning.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/plasmid_detection.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/qc.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/registry.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/statistics.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/typing.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/skills/visualization.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/standard_tables.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/statistics.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/autoplasm/timeouts.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/cli.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/config.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/config_models.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/contracts/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/contracts/lint.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/contracts/lint_template.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/contracts/step_contract.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/dag.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/dag_planner.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/diagnostics.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/doctor.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/errors.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/execution_policy.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/executor.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/exporters/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/exporters/nextflow.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/exporters/snakemake.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/figures/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/figures/base.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/filesystem.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/interfaces.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/internal.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/jobs/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/jobs/client.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/jobs/service.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/json_utils.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/mcp/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/mcp/_tool_factory.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/mcp/server.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/openai_contracts.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/path_policy.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/permissions.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugin.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/amplicon_16s.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/easymetagenome/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/easymetagenome/adapters.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/easymetagenome/handlers.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/easymetagenome/report_manifest.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/easymetagenome/workflow.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/cli.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/config.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/context_resolver.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/dashboard.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/filesystem.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/json_utils.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/logger.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/normalize/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/normalize/abundance.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/normalize/annotation.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/normalize/plasmid_prediction.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/parsers.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/pipeline.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/pipeline_dag.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/planner.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/progress.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/report/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/report/html.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/report/markdown.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/resources.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/result_validation.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/sample_sheet.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/schemas.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/selectors.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/abundance.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/annotation.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/assembly.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/base.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/host_prediction.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/plasmid_binning.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/plasmid_detection.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/qc.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/registry.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/statistics.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/typing.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/skills/visualization.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/standard_tables.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/statistics.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/timeouts.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/_engine/tool_defaults.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metagenomic_plasmid/handlers.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/metatranscriptomics.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/rnaseq_expression.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/validator.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/viral_viwrap/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/viral_viwrap/artifact_mapper.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/viral_viwrap/checker.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/viral_viwrap/command_builder.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/viral_viwrap/errors.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/viral_viwrap/handlers.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/viral_viwrap/parser.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/viral_viwrap/plan_outputs.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/viral_viwrap/runner.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/plugins/wgs_bacteria.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/provenance.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/report.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/report/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/report/citations.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/report/generic_report.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/report/html.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/report/limitations.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/report/methods.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/resource_downloader.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/resources.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/results.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/runtime_environment.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/runtime_lock.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/runtimes/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/runtimes/base.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/runtimes/hpc.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/runtimes/local.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/runtimes/nextflow.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/runtimes/snakemake.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/schemas.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/adapters.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/api.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/cli.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/lint/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/provenance/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/annotation_layout.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/matplotlib_renderer.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/alpha_stats_boxplot.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/barplot.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/boxplot_with_points.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/differential_volcano.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/genus_heatmap.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/heatmap.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/lineplot.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/ordination_plot.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/pcoa_plot.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/phylogenetic_heatmap.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/phylum_stacked_bar.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/scatterplot.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/stacked_barplot.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/violin_with_box.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/renderers/plots/volcano_plot.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/schema/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/schema/figure_spec.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/schema/palette_spec.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/schema/theme_spec.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/conftest.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_biological_renderers.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_heatmap.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_lineplot.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_lint.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_matplotlib_renderer_unit.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_pcoa.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_render.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_renderer_contract.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_renderer_error_paths.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_schema.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_smoke_all_renderers.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_stacked_bar.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/tests/test_volcano.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/sciplot/validators/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/skill_installer.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/step_runner.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/tables.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/testing.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/testing/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/testing/benchmark.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/timeouts.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/tool_catalog.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/tool_descriptors.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/tools.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/tsv_mapping.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/workflow/__init__.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/workflow/catalog.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/workflow/compiled_plan.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/workflow/execution.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/workflow/figure_specs.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/workflow/manifest.py</loc></url>
<url><loc>https://filehashintel.com/name/abi/workflow/validation.py</loc></url>
</urlset>
