PyPI project
adagenes
80 indexed releases ยท newest sdist 0.5.3 with 225 indexed members
Files in 0.5.3 adagenes-0.5.3.tar.gz
- adagenes/__init__.py
- adagenes/__main__.py
- adagenes/app/__init__.py
- adagenes/app/app_analyze.py
- adagenes/app/app_annotate.py
- adagenes/app/app_io.py
- adagenes/app/app_load_data.py
- adagenes/app/app_parse_data.py
- adagenes/app/app_processing.py
- adagenes/app/app_tools.py
- adagenes/app/bframe_to_dataframe.py
- adagenes/app/db_client.py
- adagenes/app/filter.py
- adagenes/app/run_liftover.py
- adagenes/app/sample_data.py
- adagenes/app/sites/__init__.py
- adagenes/app/sites/about.py
- adagenes/app/stats.py
- adagenes/app/table.py
- adagenes/app/transform_model.py
- adagenes/cli.py
- adagenes/clients/__init__.py
- adagenes/clients/annotate/__init__.py
- adagenes/clients/annotate/blosum_client.py
- adagenes/clients/annotate/hgvs_notation.py
- adagenes/clients/annotate/liftover_annotation.py
- adagenes/clients/annotate/type_recognition.py
- adagenes/clients/api_clients/__init__.py
- adagenes/clients/api_clients/uniprot_client.py
- adagenes/clients/client.py
- adagenes/clients/filter/__init__.py
- adagenes/clients/filter/allele_filter.py
- adagenes/clients/filter/chrom_filter.py
- adagenes/clients/filter/combined_filter.py
- adagenes/clients/filter/defined_variant_filter.py
- adagenes/clients/filter/filter_feature.py
- adagenes/clients/filter/number_filter.py
- adagenes/clients/filter/position_filter.py
- adagenes/clients/filter/random_variant_filter.py
- adagenes/clients/filter/section_filter.py
- adagenes/clients/filter/text_filter.py
- adagenes/clients/filter/type_filter.py
- adagenes/clients/network/__init__.py
- adagenes/clients/network/rest_client.py
- adagenes/clients/plot/__init__.py
- adagenes/clients/processor/__init__.py
- adagenes/clients/processor/vcf_processor.py
- adagenes/clients/reader/__init__.py
- adagenes/clients/reader/avf_reader.py
- adagenes/clients/reader/bed_reader.py
- adagenes/clients/reader/csv_reader.py
- adagenes/clients/reader/fasta_reader.py
- adagenes/clients/reader/gtf_reader.py
- adagenes/clients/reader/json_reader.py
- adagenes/clients/reader/maf_reader.py
- adagenes/clients/reader/reader.py
- adagenes/clients/reader/tsv_reader.py
- adagenes/clients/reader/txt_reader.py
- adagenes/clients/reader/vcf_reader.py
- adagenes/clients/reader/xlsx_reader.py
- adagenes/clients/sort/__init__.py
- adagenes/clients/sort/positional_sort.py
- adagenes/clients/transform/__init__.py
- adagenes/clients/transform/combination_client.py
- adagenes/clients/transform/dataframe.py
- adagenes/clients/transform/dragen_to_vcf_client.py
- adagenes/clients/transform/fasta_variants.py
- adagenes/clients/transform/liftover_client.py
- adagenes/clients/transform/normalize.py
- adagenes/clients/transform/protein_to_genomic.py
- adagenes/clients/transform/transcript_to_genomic.py
- adagenes/clients/transform/vcf_transformator.py
- adagenes/clients/writer/__init__.py
- adagenes/clients/writer/avf_writer.py
- adagenes/clients/writer/bed_writer.py
- adagenes/clients/writer/csv_writer.py
- adagenes/clients/writer/json_writer.py
- adagenes/clients/writer/maf_writer.py
- adagenes/clients/writer/normalized_data_writer.py
- adagenes/clients/writer/pandas_writer.py
- adagenes/clients/writer/pdf_writer.py
- adagenes/clients/writer/tsv_writer.py
- adagenes/clients/writer/txt_writer.py
- adagenes/clients/writer/vcf_writer.py
- adagenes/clients/writer/writer.py
- adagenes/clients/writer/xlsx_writer.py
- adagenes/conf/__init__.py
- adagenes/conf/read_config.py
- adagenes/conf/vcf_config.py
- adagenes/plot/__init__.py
- adagenes/plot/generate_data/__init__.py
- adagenes/plot/generate_data/generate_aa_features_heatmap_data.py
- adagenes/plot/generate_data/generate_chromosome_positions_data.py
- adagenes/plot/generate_data/generate_needleplot_data.py
- adagenes/plot/generate_data/generate_protein_pathogenicity_heatmap_data.py
- adagenes/plot/generate_data/generate_protein_plot.py
- adagenes/plot/generate_data/generate_radarplot_data.py
- adagenes/plot/generate_data/generate_sunburst_plot_data.py
- adagenes/plot/generate_data/generate_upset_plot_data.py
- adagenes/plot/generate_data/plot_config.py
- adagenes/plot/generate_plot_graph_data.py
- adagenes/plot/generate_plots/__init__.py
- adagenes/plot/generate_plots/drug_classification_intersections.py
- adagenes/plot/generate_plots/generate_aa_features_heatmap_plots.py
- adagenes/plot/generate_plots/generate_network_graph.py
- adagenes/plot/generate_plots/generate_protein_pathogenicity_heatmap.py
- adagenes/plot/generate_plots/generate_radarplot.py
- adagenes/plot/generate_plots/generate_sunburst_plots.py
- adagenes/plot/generate_plots/generate_upset_plots.py
- adagenes/plot/generate_upset_plot_data.py
- adagenes/processing/__init__.py
- adagenes/processing/json_biomarker.py
- adagenes/processing/parse_http_responses.py
- adagenes/processing/process_files.py
- adagenes/processing/protein_to_genomic.py
- adagenes/run_scripts/__init__.py
- adagenes/tools/__init__.py
- adagenes/tools/biomarker_types.py
- adagenes/tools/client_mgt.py
- adagenes/tools/data_io.py
- adagenes/tools/data_structures.py
- adagenes/tools/dataframe.py
- adagenes/tools/filter_file.py
- adagenes/tools/format_requests.py
- adagenes/tools/frameshift.py
- adagenes/tools/hgvs_re.py
- adagenes/tools/identify_biomarkers.py
- adagenes/tools/json_mgt.py
- adagenes/tools/load_dataframe.py
- adagenes/tools/log.py
- adagenes/tools/log_files.py
- adagenes/tools/maf_mgt.py
- adagenes/tools/module_requests.py
- adagenes/tools/normalize_variants.py
- adagenes/tools/parse_annotations.py
- adagenes/tools/parse_args.py
- adagenes/tools/parse_cancer_type_labels.py
- adagenes/tools/parse_dataframes.py
- adagenes/tools/parse_drug_names.py
- adagenes/tools/parse_genomic_data.py
- adagenes/tools/parse_indel_locations.py
- adagenes/tools/parse_vcf.py
- adagenes/tools/preprocessing.py
- adagenes/tools/reference_genomes.py
- adagenes/tools/seqcat_genetogenomic_client.py
- adagenes/tools/seqcat_genomictogene_client.py
- adagenes/tools/sequential_annotation.py
- plots/__init__.py
- plots/tcga_single_patient.py
- setup.py
- tests/__init__.py
- tests/annotation/__init__.py
- tests/annotation/test_blosum_client.py
- tests/annotation/test_liftover_annotation.py
- tests/annotation/test_type_recognition.py
- tests/formats/__init__.py
- tests/formats/test_bframe.py
- tests/formats/test_json/__init__.py
- tests/formats/test_json/test_json_annotation.py
- tests/formats/test_json/test_json_reader_writer.py
- tests/formats/test_transformations/__init__.py
- tests/formats/test_transformations/test_txt2csv.py
- tests/formats/test_transformations/test_vcf_to_csv.py
- tests/formats/test_vcf_to_bed.py
- tests/preprocessing/__init__.py
- tests/preprocessing/test_aa_exchange_biomarker_detection.py
- tests/preprocessing/test_biomarker_type_recognition.py
- tests/preprocessing/test_biomarker_type_recognition_indels.py
- tests/preprocessing/test_biomarker_type_recognition_transcripts.py
- tests/preprocessing/test_gene_request.py
- tests/preprocessing/test_multiple_biomarker_requests.py
- tests/preprocessing/test_preprocessing.py
- tests/preprocessing/test_protein_to_genomic.py
- tests/preprocessing/test_request_type_identification.py
- tests/preprocessing/test_variant_type_recognition_proteins.py
- tests/processing/__init__.py
- tests/processing/compare_files.py
- tests/processing/read_files_with_mapping.py
- tests/processing/test_generate_biomarker_frame.py
- tests/processing/test_get_processor.py
- tests/processing/test_load_bframe.py
- tests/processing/test_processor_writers.py
- tests/processing/test_stream_based_csv.py
- tests/processing/test_stream_based_filtering.py
- tests/processing/test_stream_based_liftover.py
- tests/read/__init__.py
- tests/read/test_avf_reader.py
- tests/read/test_bed_reader.py
- tests/read/test_csv_reader.py
- tests/read/test_dragen_reader.py
- tests/read/test_fasta_reader.py
- tests/read/test_gtf_reader.py
- tests/read/test_maf_reader.py
- tests/read/test_tsv_reader.py
- tests/read/test_txt_reader.py
- tests/read/test_vcf_reader.py
- tests/read/test_vcf_reader1.py
- tests/read/test_xlsx_reader.py
- tests/tools/__init__.py
- tests/tools/test_alternate_alleles.py
- tests/tools/test_amino_acid_parsing.py
- tests/tools/test_data_structures.py
- tests/tools/test_dna_normalization.py
- tests/tools/test_file_types.py
- tests/tools/test_frameshift.py
- tests/tools/test_hgvs_re.py
- tests/tools/test_identify_biomarkers.py
- tests/tools/test_parse_genome_position.py
- tests/tools/test_parse_genomic_data.py
- tests/tools/test_parse_indel.py
- tests/tools/test_protein_normalization.py
- tests/tools/test_read_custom_file.py
- tests/tools/test_remove_duplicate_pmids.py
- tests/tools/test_seqcat_gene_to_genomic.py
- tests/tools/test_seqcat_genomic_to_gene.py
- tests/tools/test_transcript_normalization.py
- tests/tools/test_wildtype_variant_filter.py
- tests/write/__init__.py
- tests/write/test_avf_writer.py
- tests/write/test_bed_writer.py
- tests/write/test_csv_write.py
- tests/write/test_maf_writer.py
- tests/write/test_tsv_writer.py
- tests/write/test_vcf_writer.py
- tests/write/test_writer.py
Indexed releases
- 0.5.3
adagenes-0.5.3.tar.gz225 members - 0.5.3
adagenes-0.5.3-py3-none-any.whl231 members - 0.5.2
adagenes-0.5.2.tar.gz230 members - 0.5.2
adagenes-0.5.2-py3-none-any.whl229 members - 0.5.1
adagenes-0.5.1.tar.gz230 members - 0.5.1
adagenes-0.5.1-py3-none-any.whl229 members - 0.5.0
adagenes-0.5.0.tar.gz230 members - 0.5.0
adagenes-0.5.0-py3-none-any.whl229 members - 0.4.9
adagenes-0.4.9.tar.gz230 members - 0.4.9
adagenes-0.4.9-py3-none-any.whl229 members - 0.4.8
adagenes-0.4.8.tar.gz229 members - 0.4.8
adagenes-0.4.8-py3-none-any.whl228 members - 0.4.7
adagenes-0.4.7.tar.gz229 members - 0.4.7
adagenes-0.4.7-py3-none-any.whl228 members - 0.4.6
adagenes-0.4.6.tar.gz229 members - 0.4.6
adagenes-0.4.6-py3-none-any.whl228 members - 0.4.5
adagenes-0.4.5.tar.gz229 members - 0.4.5
adagenes-0.4.5-py3-none-any.whl228 members - 0.4.4
adagenes-0.4.4.tar.gz228 members - 0.4.4
adagenes-0.4.4-py3-none-any.whl227 members - 0.4.3
adagenes-0.4.3.tar.gz222 members - 0.4.3
adagenes-0.4.3-py3-none-any.whl221 members - 0.4.2
adagenes-0.4.2.tar.gz222 members - 0.4.2
adagenes-0.4.2-py3-none-any.whl531 members - 0.4.0
adagenes-0.4.0.tar.gz219 members - 0.4.0
adagenes-0.4.0-py3-none-any.whl521 members - 0.3.9
adagenes-0.3.9.tar.gz218 members - 0.3.9
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adagenes-0.3.7.tar.gz218 members - 0.3.7
adagenes-0.3.7-py3-none-any.whl520 members - 0.3.6
adagenes-0.3.6.tar.gz215 members - 0.3.6
adagenes-0.3.6-py3-none-any.whl517 members - 0.3.5
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adagenes-0.3.4.tar.gz214 members - 0.3.4
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adagenes-0.3.1.tar.gz212 members - 0.3.1
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adagenes-0.3.0-py3-none-any.whl513 members - 0.2.9
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adagenes-0.2.7-py3-none-any.whl508 members - 0.2.6
adagenes-0.2.6.tar.gz206 members - 0.2.6
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adagenes-0.2.4.tar.gz203 members - 0.2.4
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adagenes-0.2.3.tar.gz202 members - 0.2.3
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adagenes-0.2.2.tar.gz200 members - 0.2.2
adagenes-0.2.2-py3-none-any.whl502 members - 0.2.1
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adagenes-0.2.0-py3-none-any.whl498 members - 0.1.9
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adagenes-0.1.4.tar.gz176 members - 0.1.4
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adagenes-0.1.2-py3-none-any.whl144 members