PyPI project
abmptools
30 indexed releases ยท newest sdist 2.8.0 with 356 indexed members
Files in 2.8.0 abmptools-2.8.0.tar.gz
- abmptools/__init__.py
- abmptools/abinit_io.py
- abmptools/addsolvfrag.py
- abmptools/ajf2config.py
- abmptools/ajfserial.py
- abmptools/amorphous/__init__.py
- abmptools/amorphous/__main__.py
- abmptools/amorphous/builder.py
- abmptools/amorphous/cli.py
- abmptools/amorphous/density.py
- abmptools/amorphous/mdp_protocol.py
- abmptools/amorphous/models.py
- abmptools/amorphous/molecule_prep.py
- abmptools/amorphous/ndx_writer.py
- abmptools/amorphous/packing.py
- abmptools/amorphous/parameterizer.py
- abmptools/amorphous/pubchem.py
- abmptools/amorphous/system_model_adapter.py
- abmptools/amorphous/trajectory_ingest.py
- abmptools/anlfmo.py
- abmptools/cg/__init__.py
- abmptools/cg/dpd/__init__.py
- abmptools/cg/dpd/__main__.py
- abmptools/cg/dpd/aij_assign.py
- abmptools/cg/dpd/aij_io.py
- abmptools/cg/dpd/calc_sett_io.py
- abmptools/cg/dpd/dpm_writer.py
- abmptools/cg/dpd/models.py
- abmptools/cg/dpd/monomer_io.py
- abmptools/cg/dpd/notebook_ui.py
- abmptools/cg/dpd/orchestrator.py
- abmptools/cg/dpd/udf_writer.py
- abmptools/cg/dpd/udf_writer_udfm.py
- abmptools/cg/membrane/__init__.py
- abmptools/cg/membrane/__main__.py
- abmptools/cg/membrane/_subprocess.py
- abmptools/cg/membrane/builder.py
- abmptools/cg/membrane/cli.py
- abmptools/cg/membrane/forcefield_check.py
- abmptools/cg/membrane/insane_runner.py
- abmptools/cg/membrane/mdp_templates.py
- abmptools/cg/membrane/models.py
- abmptools/cg/membrane/pmf.py
- abmptools/cg/membrane/pulling.py
- abmptools/cg/membrane/system_packer.py
- abmptools/cg/membrane/topology_composer.py
- abmptools/cg/membrane/umbrella.py
- abmptools/cg/peptide/__init__.py
- abmptools/cg/peptide/__main__.py
- abmptools/cg/peptide/_subprocess.py
- abmptools/cg/peptide/builder.py
- abmptools/cg/peptide/cli.py
- abmptools/cg/peptide/forcefield_check.py
- abmptools/cg/peptide/martinize_runner.py
- abmptools/cg/peptide/mdp_templates.py
- abmptools/cg/peptide/models.py
- abmptools/cg/peptide/peptide_atomistic.py
- abmptools/cg/peptide/system_packer.py
- abmptools/cg/peptide/top_writer.py
- abmptools/cg/peptide/water_box.py
- abmptools/convertcpf.py
- abmptools/core/__init__.py
- abmptools/core/system_model.py
- abmptools/cpf2ifielist.py
- abmptools/cpfmanager.py
- abmptools/crystal/__init__.py
- abmptools/crystal/__main__.py
- abmptools/crystal/_subprocess.py
- abmptools/crystal/atom_distance.py
- abmptools/crystal/builder.py
- abmptools/crystal/cif_engine_ase.py
- abmptools/crystal/cif_engine_legacy.py
- abmptools/crystal/cli.py
- abmptools/crystal/forcefield_check.py
- abmptools/crystal/job_templates.py
- abmptools/crystal/legacy/__init__.py
- abmptools/crystal/models.py
- abmptools/crystal/postproc.py
- abmptools/formulation/__init__.py
- abmptools/formulation/__main__.py
- abmptools/formulation/_subprocess.py
- abmptools/formulation/analysis/__init__.py
- abmptools/formulation/analysis/aggregate_transition.py
- abmptools/formulation/analysis/contact_map.py
- abmptools/formulation/analysis/hbond.py
- abmptools/formulation/analysis/plots.py
- abmptools/formulation/analysis/preprocess.py
- abmptools/formulation/analysis/residue_ref.py
- abmptools/formulation/analysis/sasa.py
- abmptools/formulation/analysis/secondary_structure.py
- abmptools/formulation/builder.py
- abmptools/formulation/cli.py
- abmptools/formulation/mdp_templates.py
- abmptools/formulation/models.py
- abmptools/formulation/ndx.py
- abmptools/formulation/packer.py
- abmptools/formulation/peptide_atomistic.py
- abmptools/formulation/peptide_atomistic_openff.py
- abmptools/formulation/small_molecule.py
- abmptools/formulation/small_molecule_openff.py
- abmptools/formulation/topology.py
- abmptools/formulation/topology_openff.py
- abmptools/formulation/umbrella_release.py
- abmptools/fragmenter/__init__.py
- abmptools/fragmenter/__main__.py
- abmptools/fragmenter/ajf_fragment.py
- abmptools/fragmenter/auto_split.py
- abmptools/fragmenter/cg_segmenter/__init__.py
- abmptools/fragmenter/cg_segmenter/__main__.py
- abmptools/fragmenter/cg_segmenter/cap_attach.py
- abmptools/fragmenter/cg_segmenter/chain_splitter.py
- abmptools/fragmenter/cg_segmenter/dpdgen_exporter.py
- abmptools/fragmenter/cg_segmenter/exporter.py
- abmptools/fragmenter/cg_segmenter/fcews_export.py
- abmptools/fragmenter/cg_segmenter/models.py
- abmptools/fragmenter/cg_segmenter/notebook_ui.py
- abmptools/fragmenter/cg_segmenter/orchestrator.py
- abmptools/fragmenter/cg_segmenter/ring_detector.py
- abmptools/fragmenter/core/__init__.py
- abmptools/fragmenter/core/cutset.py
- abmptools/fragmenter/cut_apply.py
- abmptools/fragmenter/expand_to_system.py
- abmptools/fragmenter/fmo_export.py
- abmptools/fragmenter/generic_fragment.py
- abmptools/fragmenter/grouping.py
- abmptools/fragmenter/headless_io.py
- abmptools/fragmenter/models.py
- abmptools/fragmenter/notebook_ui.py
- abmptools/fragmenter/nucleic_fragment.py
- abmptools/fragmenter/pdb_loader.py
- abmptools/fragmenter/polymer.py
- abmptools/fragmenter/protein_fragment.py
- abmptools/generate_difie.py
- abmptools/generateajf.py
- abmptools/genesis/__init__.py
- abmptools/genesis/grest/__init__.py
- abmptools/genesis/grest/__main__.py
- abmptools/genesis/grest/_subprocess.py
- abmptools/genesis/grest/analysis.py
- abmptools/genesis/grest/builder.py
- abmptools/genesis/grest/cli.py
- abmptools/genesis/grest/forcefield_check.py
- abmptools/genesis/grest/grest_runner.py
- abmptools/genesis/grest/inp_writer.py
- abmptools/genesis/grest/models.py
- abmptools/genesis/grest/replica_temperatures.py
- abmptools/genesis/grest/rest_selection.py
- abmptools/genesis/grest/system_builder.py
- abmptools/genesis/mmgbsa/__init__.py
- abmptools/genesis/mmgbsa/__main__.py
- abmptools/genesis/mmgbsa/_subprocess.py
- abmptools/genesis/mmgbsa/analysis.py
- abmptools/genesis/mmgbsa/builder.py
- abmptools/genesis/mmgbsa/cli.py
- abmptools/genesis/mmgbsa/forcefield_check.py
- abmptools/genesis/mmgbsa/gbsa_runner.py
- abmptools/genesis/mmgbsa/inp_writer.py
- abmptools/genesis/mmgbsa/ligand_parameterize.py
- abmptools/genesis/mmgbsa/models.py
- abmptools/genesis/mmgbsa/pdb_splitter.py
- abmptools/genesis/mmgbsa/system_builder.py
- abmptools/geomopt/__init__.py
- abmptools/geomopt/mace_optimizer.py
- abmptools/geomopt/openff_openmm_minimizer.py
- abmptools/geomopt/pyscf_optimizer.py
- abmptools/getcharge.py
- abmptools/getifiepieda.py
- abmptools/gro2udf/__init__.py
- abmptools/gro2udf/__main__.py
- abmptools/gro2udf/cli.py
- abmptools/gro2udf/exporter.py
- abmptools/gro2udf/gro_adapter.py
- abmptools/gro2udf/gro_parser.py
- abmptools/gro2udf/mdp_parser.py
- abmptools/gro2udf/top_adapter.py
- abmptools/gro2udf/top_exporter.py
- abmptools/gro2udf/top_model.py
- abmptools/gro2udf/top_parser.py
- abmptools/gro2udf/trajectory_io.py
- abmptools/gro2udf/udf_writer.py
- abmptools/hbond/__init__.py
- abmptools/hbond/__main__.py
- abmptools/hbond/analyzer.py
- abmptools/hbond/bdf_reader.py
- abmptools/hbond/classifier.py
- abmptools/hbond/cli.py
- abmptools/hbond/colorizer.py
- abmptools/hbond/diagram.py
- abmptools/hbond/distance_dist.py
- abmptools/hbond/func_tags.py
- abmptools/hbond/functional_groups.py
- abmptools/hbond/hbond_detector.py
- abmptools/hbond/lifetime.py
- abmptools/hbond/mda_reader.py
- abmptools/hbond/notebook_ui.py
- abmptools/hbond/pair_type_stats.py
- abmptools/log2config.py
- abmptools/log2cpf.py
- abmptools/logmanager.py
- abmptools/membrane/__init__.py
- abmptools/membrane/bilayer.py
- abmptools/membrane/builder.py
- abmptools/membrane/lipid_info.py
- abmptools/membrane/mdp_us_protocol.py
- abmptools/membrane/models.py
- abmptools/membrane/parameterize_amber.py
- abmptools/membrane/parameterize_charmm.py
- abmptools/membrane/pmf.py
- abmptools/membrane/pulling.py
- abmptools/membrane/topology_sanity.py
- abmptools/membrane/umbrella.py
- abmptools/mol_io.py
- abmptools/molcalc.py
- abmptools/pdb2fmo.py
- abmptools/pdb_io.py
- abmptools/pdbmodify.py
- abmptools/readcif.py
- abmptools/setfmo.py
- abmptools/trajectory/__init__.py
- abmptools/trajectory/__main__.py
- abmptools/trajectory/cli.py
- abmptools/trajectory/postprocess.py
- abmptools/udf2fmo.py
- abmptools/udf2gro/__init__.py
- abmptools/udf2gro/__main__.py
- abmptools/udf2gro/cli.py
- abmptools/udf2gro/exporter.py
- abmptools/udf2gro/gromacs/__init__.py
- abmptools/udf2gro/gromacs/writers/__init__.py
- abmptools/udf2gro/gromacs/writers/_validator.py
- abmptools/udf2gro/gromacs/writers/gro_writer.py
- abmptools/udf2gro/gromacs/writers/itp_writer.py
- abmptools/udf2gro/gromacs/writers/mdp_writer.py
- abmptools/udf2gro/gromacs/writers/top_writer.py
- abmptools/udf2gro/udf_adapter.py
- abmptools/udf_io.py
- abmptools/udfcharge/__init__.py
- abmptools/udfcharge/__main__.py
- abmptools/udfcharge/core.py
- abmptools/udfcreate.py
- abmptools/udfcreate_v2.py
- abmptools/udfrm_io.py
- setup.py
- tests/test_abinit_io.py
- tests/test_amorphous_models.py
- tests/test_amorphous_molecule_prep.py
- tests/test_anlfmo.py
- tests/test_builder_integration.py
- tests/test_builder_mocked.py
- tests/test_cg_membrane_builder_mocked.py
- tests/test_cg_membrane_cli.py
- tests/test_cg_membrane_forcefield_check.py
- tests/test_cg_membrane_insane_runner.py
- tests/test_cg_membrane_integration.py
- tests/test_cg_membrane_mdp.py
- tests/test_cg_membrane_models.py
- tests/test_cg_membrane_packer.py
- tests/test_cg_membrane_pmf.py
- tests/test_cg_membrane_pulling.py
- tests/test_cg_membrane_topology_composer.py
- tests/test_cg_membrane_umbrella.py
- tests/test_cg_peptide_atomistic.py
- tests/test_cg_peptide_builder_mocked.py
- tests/test_cg_peptide_cli.py
- tests/test_cg_peptide_forcefield_check.py
- tests/test_cg_peptide_integration.py
- tests/test_cg_peptide_martinize_runner.py
- tests/test_cg_peptide_mdp.py
- tests/test_cg_peptide_models.py
- tests/test_cg_peptide_packer.py
- tests/test_cg_peptide_subprocess.py
- tests/test_cg_peptide_topwriter.py
- tests/test_cg_peptide_water_box.py
- tests/test_charge_method.py
- tests/test_cli_scripts.py
- tests/test_cpfmanager.py
- tests/test_crystal_atom_distance.py
- tests/test_crystal_builder.py
- tests/test_crystal_cif_ase.py
- tests/test_crystal_cif_legacy.py
- tests/test_crystal_cli.py
- tests/test_crystal_job_templates.py
- tests/test_crystal_models.py
- tests/test_crystal_numeric_regression.py
- tests/test_crystal_regression.py
- tests/test_density.py
- tests/test_formulation_analysis.py
- tests/test_formulation_builder.py
- tests/test_formulation_mdp.py
- tests/test_formulation_models.py
- tests/test_formulation_ndx.py
- tests/test_formulation_packer.py
- tests/test_formulation_peptide_atomistic.py
- tests/test_formulation_small_molecule.py
- tests/test_formulation_topology.py
- tests/test_formulation_umbrella_release.py
- tests/test_getifiepieda.py
- tests/test_grest_analysis_mocked.py
- tests/test_grest_builder_mocked.py
- tests/test_grest_byo_topology.py
- tests/test_grest_cli.py
- tests/test_grest_inp_writer.py
- tests/test_grest_integration.py
- tests/test_grest_ligand_build.py
- tests/test_grest_models.py
- tests/test_grest_param_tuning.py
- tests/test_grest_replica_temperatures.py
- tests/test_grest_rest_autoselect.py
- tests/test_grest_rest_selection.py
- tests/test_grest_system_builder.py
- tests/test_gro_adapter.py
- tests/test_gro_parser.py
- tests/test_gro_writer.py
- tests/test_interchange_adapter.py
- tests/test_logmanager.py
- tests/test_mdp_parser.py
- tests/test_mdp_protocol.py
- tests/test_mdp_writer.py
- tests/test_membrane_charmm_translate.py
- tests/test_membrane_mixed_lipid.py
- tests/test_membrane_topology_sanity.py
- tests/test_mmgbsa_analysis.py
- tests/test_mmgbsa_builder_mocked.py
- tests/test_mmgbsa_cli.py
- tests/test_mmgbsa_forcefield_check.py
- tests/test_mmgbsa_inp_writer.py
- tests/test_mmgbsa_integration.py
- tests/test_mmgbsa_models.py
- tests/test_mmgbsa_pdb_splitter.py
- tests/test_mmgbsa_system_builder.py
- tests/test_mol_io.py
- tests/test_molcalc.py
- tests/test_ndx_writer.py
- tests/test_parameterizer.py
- tests/test_pdb_io.py
- tests/test_pubchem.py
- tests/test_pyscf_optimizer.py
- tests/test_pyscf_parsers.py
- tests/test_read_ifie_hf_fallback.py
- tests/test_readcif.py
- tests/test_regression.py
- tests/test_setfmo.py
- tests/test_system_model.py
- tests/test_system_model_extensions.py
- tests/test_top_exporter_frames_override.py
- tests/test_top_exporter_pressure_dc.py
- tests/test_top_model.py
- tests/test_top_parser.py
- tests/test_top_writer.py
- tests/test_trajectory_ingest.py
- tests/test_trajectory_postprocess.py
- tests/test_udf_io.py
- tests/test_udfcreate.py
- tests/test_udfcreate_v2.py
- tests/test_udfcreate_v2_byte_equivalence.py
- tests/test_udfrm_io.py
Indexed releases
- 2.8.0
abmptools-2.8.0.tar.gz356 members - 2.8.0
abmptools-2.8.0-py3-none-any.whl242 members - 2.7.0
abmptools-2.7.0.tar.gz350 members - 2.7.0
abmptools-2.7.0-py3-none-any.whl240 members - 2.6.0
abmptools-2.6.0.tar.gz350 members - 2.6.0
abmptools-2.6.0-py3-none-any.whl240 members - 2.4.1
abmptools-2.4.1.tar.gz340 members - 2.4.1
abmptools-2.4.1-py3-none-any.whl232 members - 2.4.0
abmptools-2.4.0.tar.gz340 members - 2.4.0
abmptools-2.4.0-py3-none-any.whl232 members - 2.3.0
abmptools-2.3.0.tar.gz340 members - 2.3.0
abmptools-2.3.0-py3-none-any.whl232 members - 2.2.1
abmptools-2.2.1.tar.gz339 members - 2.2.1
abmptools-2.2.1-py3-none-any.whl231 members - 2.2.0
abmptools-2.2.0.tar.gz339 members - 2.2.0
abmptools-2.2.0-py3-none-any.whl231 members - 2.1.0
abmptools-2.1.0.tar.gz333 members - 2.1.0
abmptools-2.1.0-py3-none-any.whl225 members - 2.0.0
abmptools-2.0.0.tar.gz324 members - 2.0.0
abmptools-2.0.0-py3-none-any.whl217 members - 1.15.4
abmptools-1.15.4.tar.gz102 members - 1.15.4
abmptools-1.15.4-py3-none-any.whl68 members - 1.15.3
abmptools-1.15.3.tar.gz100 members - 1.15.3
abmptools-1.15.3-py3-none-any.whl68 members - 1.15.2
abmptools-1.15.2.tar.gz98 members - 1.15.2
abmptools-1.15.2-py3-none-any.whl67 members - 1.15.1
abmptools-1.15.1.tar.gz98 members - 1.15.1
abmptools-1.15.1-py3-none-any.whl67 members - 1.15.0
abmptools-1.15.0.tar.gz97 members - 1.15.0
abmptools-1.15.0-py3-none-any.whl67 members